I believe a few things can be added to the patch to make aeon more competitive for naval warfare.
1) Give Tempest more speed, so that it can move a bit better and be able to avoir some slow shots like Cruisers missiles. I suggest +0.3 speed (I wonder why only the Atlantis recieved it when the Tempest needs it as well for the exact same reason). Another possibility instead of speed is to add some HP to make up for the fact that it can be hit by everything without possibility of dodging, so maybe + 10000 HP.
2) Give + 750 HP to the T3 torpedo bomber (Solace). Why 750 hp? Because it's the HP value that will allow it to survive one more Cruiser salvo. It should help this unit to be used for more than a single pass. Right now, it dies too easily to Cruisers, it's (much) better to make multiple t2 torp bombers mass for mass.
This buff will make up for Aeon very specialized navy at t3.
I don't think anything needs to be changed for t2 navy, since the mobile shield big buff will make Aeon navy super strong at this stage.